PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019788.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 398aa    MW: 42373 Da    PI: 6.0117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019788.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09208255455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Do019788.1 208 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 255
                 8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16202269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-10202259No hitNo description
Gene3DG3DSA:4.10.280.107.7E-16204267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6208255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEGRAGGGDY ITSLLSSSPR LDFGVLGAVP AAMLDGAAAS GGDGGEDCLE RFCGDPGFAE  60
RAARLSSFSG HRFAAAATGL FGLPPPASNG EFAGSREASS VSDPASAMRD ANAKKRKAPA  120
AAKGKGKESS AQAGEQKDPD AKRCKTDGAE RKKEEGDVKP KSEQAGSDSS VEDGGQQKPS  180
GKGRNAKPVE PPKDYVHVRA RRGQATDSHS LAERVRRERI SQRMKVLQDL VPGCNKVIGK  240
ALMLDEIINY VQSLQRQVEF LSMKLATVNP LDFSNLPTLL QKDMFQACGP SSSSVFSLES  300
SSSGFPFSDQ GDVFQSFVPN GLENQCGLNP LDLALSQATN AQYAFQDGTA STNLQQRNFW  360
EEDLQSVFHI DNGQSQENGV SAQSFHGQLQ AGHMKMEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973933.10.0PREDICTED: transcription factor bHLH78-like
TrEMBLK3YHZ80.0K3YHZ8_SETIT; Uncharacterized protein
STRINGSi013867m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-56bHLH family protein